HL_6HCQ_067

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_067 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.2388

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6HCQ|1|51|U|4497
6HCQ|1|51|U|4498
6HCQ|1|51|G|4499
6HCQ|1|51|U|4500
6HCQ|1|51|U|4501
6HCQ|1|51|C|4502
6HCQ|1|51|A|4503

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain q3

Transfer RNA; tRNA