HL_6HCQ_071

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6HCQ|1|51|G|4694, 6HCQ|1|51|C|4698

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1896

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6HCQ|1|51|C|4688
6HCQ|1|51|U|4689
6HCQ|1|51|G|4690
6HCQ|1|51|A|4691
6HCQ|1|51|A|4692
6HCQ|1|51|C|4693
6HCQ|1|51|G|4694
6HCQ|1|51|C|4695
6HCQ|1|51|C|4696
6HCQ|1|51|U|4697
6HCQ|1|51|C|4698
6HCQ|1|51|U|4699
6HCQ|1|51|A|4700
6HCQ|1|51|A|4701
6HCQ|1|51|G|4702

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain O3

uL13

Chain m3

eL40