HL_6HCQ_079

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUGAAUUGCAGGUUGAUC

Length

18 nucleotides

Bulged bases

6HCQ|1|81|U|86

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|81|G|68
6HCQ|1|81|U|69
6HCQ|1|81|G|70
6HCQ|1|81|A|71
6HCQ|1|81|A|72
6HCQ|1|81|U|73
6HCQ|1|81|U|74
6HCQ|1|81|G|75
6HCQ|1|81|C|76
6HCQ|1|81|A|77
6HCQ|1|81|G|78
6HCQ|1|81|G|79
6HCQ|1|81|U|85
6HCQ|1|81|U|86
6HCQ|1|81|G|87
6HCQ|1|81|A|88
6HCQ|1|81|U|89
6HCQ|1|81|C|90

Current chains

Chain 81

5.8S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain Y3

Ribosomal protein L26

Chain h3

uL29

Chain j3

Ribosomal protein L37

Chain l3

eL39