HL_6HCQ_085

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_085 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3853

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87381.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

6HCQ|1|A2|C|196
6HCQ|1|A2|U|197
6HCQ|1|A2|U|198
6HCQ|1|A2|C|199
6HCQ|1|A2|G|200
6HCQ|1|A2|C|201
6HCQ|1|A2|G|202
6HCQ|1|A2|G|203

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain J2

eS8