HL_6HCQ_094

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_094 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3686

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6HCQ|1|A2|U|538
6HCQ|1|A2|C|539
6HCQ|1|A2|U|540
6HCQ|1|A2|U|541
6HCQ|1|A2|U|542
6HCQ|1|A2|C|543
6HCQ|1|A2|G|544
6HCQ|1|A2|A|545

Current chains

Chain A2

18S ribosomal RNA

Nearby chains