HL_6HCQ_097

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAAAAAAUUAGAGUGUUCAAAGCAGGCCGCCUGGAUACCGCAGC

Length

44 nucleotides

Bulged bases

6HCQ|1|A2|G|821

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|G|807
6HCQ|1|A2|A|808
6HCQ|1|A2|A|809
6HCQ|1|A2|A|810
6HCQ|1|A2|A|811
6HCQ|1|A2|A|812
6HCQ|1|A2|A|813
6HCQ|1|A2|U|814
6HCQ|1|A2|U|815
6HCQ|1|A2|A|816
6HCQ|1|A2|G|817
6HCQ|1|A2|A|818
6HCQ|1|A2|G|819
6HCQ|1|A2|U|820
6HCQ|1|A2|G|821
6HCQ|1|A2|U|822
6HCQ|1|A2|U|823
6HCQ|1|A2|C|824
6HCQ|1|A2|A|825
6HCQ|1|A2|A|826
6HCQ|1|A2|A|827
6HCQ|1|A2|G|828
6HCQ|1|A2|C|829
6HCQ|1|A2|A|830
6HCQ|1|A2|G|831
6HCQ|1|A2|G|832
6HCQ|1|A2|C|833
6HCQ|1|A2|C|834
6HCQ|1|A2|G|841
6HCQ|1|A2|C|842
6HCQ|1|A2|C|843
6HCQ|1|A2|U|844
6HCQ|1|A2|G|845
6HCQ|1|A2|G|846
6HCQ|1|A2|A|847
6HCQ|1|A2|U|848
6HCQ|1|A2|A|849
6HCQ|1|A2|C|850
6HCQ|1|A2|C|851
6HCQ|1|A2|G|852
6HCQ|1|A2|C|853
6HCQ|1|A2|A|854
6HCQ|1|A2|G|855
6HCQ|1|A2|C|856

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain K2

Ribosomal protein S9 (Predicted)

Chain M2

Ribosomal protein S11

Chain X2

Ribosomal protein S15a

Chain Z2

eS24