HL_6HCQ_117

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAUUGAAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_117 not in the Motif Atlas

Homologous match to HL_2BTE_002

Geometric discrepancy: 0.2821

The information below is about HL_2BTE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|q3|G|30
6HCQ|1|q3|A|31
6HCQ|1|q3|U|32
6HCQ|1|q3|U|33
6HCQ|1|q3|G|34
6HCQ|1|q3|A|35
6HCQ|1|q3|A|36
6HCQ|1|q3|A|37
6HCQ|1|q3|A|38
6HCQ|1|q3|U|39
6HCQ|1|q3|C|40

Current chains

Chain q3

A/P tRNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Q2

uS19

Chain Y2

uS12

Chain v3

mRNA