HL_6HCQ_118
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCQ_118 not in the Motif Atlas
- Homologous match to HL_3AMU_003
- Geometric discrepancy: 0.235
- The information below is about HL_3AMU_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6HCQ|1|q3|G|53
6HCQ|1|q3|U|54
6HCQ|1|q3|U|55
6HCQ|1|q3|C|56
6HCQ|1|q3|G|57
6HCQ|1|q3|A|58
6HCQ|1|q3|U|59
6HCQ|1|q3|U|60
6HCQ|1|q3|C|61
Current chains
- Chain q3
- A/P tRNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: