HL_6HCQ_147

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGAGCCUGAGAAACGGCUAC

Length

20 nucleotides

Bulged bases

6HCQ|1|A2|C|450, 6HCQ|1|A2|G|451

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|G|437
6HCQ|1|A2|G|438
6HCQ|1|A2|A|439
6HCQ|1|A2|G|440
6HCQ|1|A2|C|441
6HCQ|1|A2|C|442
6HCQ|1|A2|U|443
6HCQ|1|A2|G|444
6HCQ|1|A2|A|445
6HCQ|1|A2|G|446
6HCQ|1|A2|A|447
6HCQ|1|A2|A|448
6HCQ|1|A2|A|449
6HCQ|1|A2|C|450
6HCQ|1|A2|G|451
6HCQ|1|A2|G|452
6HCQ|1|A2|C|453
6HCQ|1|A2|U|454
6HCQ|1|A2|A|455
6HCQ|1|A2|C|456

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain H2

40S ribosomal protein S6

Chain J2

eS8

Chain V3

Ribosomal protein L23

Chain Z2

eS24