HL_6HCQ_148

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCCAAGGA

Length

8 nucleotides

Bulged bases

6HCQ|1|A2|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_148 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3744

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6HCQ|1|A2|U|461
6HCQ|1|A2|C|462
6HCQ|1|A2|C|463
6HCQ|1|A2|A|464
6HCQ|1|A2|A|465
6HCQ|1|A2|G|466
6HCQ|1|A2|G|467
6HCQ|1|A2|A|468

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain V3

Ribosomal protein L23