HL_6HCQ_154

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GACAGAUUGAUAGCUCUUUC

Length

20 nucleotides

Bulged bases

6HCQ|1|A2|U|1300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|G|1290
6HCQ|1|A2|A|1291
6HCQ|1|A2|C|1292
6HCQ|1|A2|A|1293
6HCQ|1|A2|G|1294
6HCQ|1|A2|A|1295
6HCQ|1|A2|U|1296
6HCQ|1|A2|U|1297
6HCQ|1|A2|G|1298
6HCQ|1|A2|A|1299
6HCQ|1|A2|U|1300
6HCQ|1|A2|A|1301
6HCQ|1|A2|G|1302
6HCQ|1|A2|C|1303
6HCQ|1|A2|U|1304
6HCQ|1|A2|C|1305
6HCQ|1|A2|U|1306
6HCQ|1|A2|U|1307
6HCQ|1|A2|U|1308
6HCQ|1|A2|C|1309

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain L2

eS10

Chain N2

40S ribosomal protein S12

Chain Q2

uS19

Chain e2

uS14

Chain g2

Ribosomal protein S27a