HL_6HCQ_163

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6HCQ|1|51|C|1325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_163 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.1773

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6HCQ|1|51|U|1317
6HCQ|1|51|C|1318
6HCQ|1|51|U|1319
6HCQ|1|51|U|1320
6HCQ|1|51|G|1321
6HCQ|1|51|A|1322
6HCQ|1|51|A|1323
6HCQ|1|51|A|1324
6HCQ|1|51|C|1325
6HCQ|1|51|A|1326

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain a3

uL15

Chain e3

eL32