HL_6HCQ_165

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6HCQ|1|51|C|1481, 6HCQ|1|51|G|1482, 6HCQ|1|51|C|1485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_165 not in the Motif Atlas

Homologous match to HL_8CRE_017

Geometric discrepancy: 0.5821

The information below is about HL_8CRE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCQ|1|51|G|1479
6HCQ|1|51|C|1480
6HCQ|1|51|C|1481
6HCQ|1|51|G|1482
6HCQ|1|51|C|1483
6HCQ|1|51|G|1484
6HCQ|1|51|C|1485
6HCQ|1|51|C|1486

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain i3

60S ribosomal protein L36