HL_6HD7_010
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGUGAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HD7_010 not in the Motif Atlas
- Homologous match to HL_8C3A_010
- Geometric discrepancy: 0.4064
- The information below is about HL_8C3A_010
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6HD7|1|1|A|357
6HD7|1|1|G|358
6HD7|1|1|U|359
6HD7|1|1|G|360
6HD7|1|1|A|361
6HD7|1|1|U|362
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain R
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L37-A
- Chain n
- 60S ribosomal protein L39
- Chain z
- nascent polypeptide chain
Coloring options: