6HD7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HD7_001 | 1/1/38:45 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_6HD7_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6HD7_003 | 1/1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6HD7_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6HD7_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6HD7_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6HD7_008 | 1/1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6HD7_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_6HD7_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6HD7_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6HD7_015 | 1/1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6HD7_016 | 1/1/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_6HD7_017 | 1/1/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_6HD7_019 | 1/1/758:773 | No text annotation | ||
| HL_6HD7_020 | 1/1/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6HD7_021 | 1/1/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6HD7_022 | 1/1/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6HD7_023 | 1/1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6HD7_025 | 1/1/1076:1083 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
| HL_6HD7_026 | 1/1/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6HD7_027 | 1/1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6HD7_031 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6HD7_032 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_6HD7_033 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6HD7_034 | 1/1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6HD7_036 | 1/1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6HD7_037 | 1/1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6HD7_038 | 1/1/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_6HD7_039 | 1/1/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6HD7_041 | 1/1/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_6HD7_042 | 1/1/1844:1851 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6HD7_043 | 1/1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6HD7_044 | 1/1/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6HD7_046 | 1/1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6HD7_047 | 1/1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6HD7_048 | 1/1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6HD7_049 | 1/1/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_6HD7_051 | 1/1/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_6HD7_052 | 1/1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6HD7_056 | 1/1/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6HD7_057 | 1/1/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6HD7_059 | 1/1/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6HD7_060 | 1/1/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6HD7_061 | 1/1/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6HD7_062 | 1/1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6HD7_064 | 1/1/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_6HD7_065 | 1/1/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6HD7_066 | 1/1/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6HD7_068 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6HD7_069 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6HD7_072 | 1/1/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6HD7_086 | 1/3/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6HD7_074 | 1/3/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_6HD7_075 | 1/3/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6HD7_076 | 1/4/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.1 | |
| HL_6HD7_077 | 1/4/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_6HD7_078 | 1/4/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6HD7_079 | 1/4/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_6HD7_081 | 1/A/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_6HD7_083 | 1/B/13:22 | tRNA D-loop | homologous HL_5B63_003 HL_65478.1 | |
| HL_6HD7_084 | 1/B/31:39 | tRNA anticodon loop | homologous HL_4V90_033 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HD7_004 | Mini UNCG | ||
| HL_6HD7_012 | No text annotation | ||
| HL_6HD7_013 | No text annotation | ||
| HL_6HD7_014 | GNRA | ||
| HL_6HD7_018 | GNRA | ||
| HL_6HD7_024 | GNRA | ||
| HL_6HD7_028 | No text annotation | ||
| HL_6HD7_029 | No text annotation | ||
| HL_6HD7_030 | No text annotation | ||
| HL_6HD7_035 | No text annotation | ||
| HL_6HD7_040 | No text annotation | ||
| HL_6HD7_045 | No text annotation | ||
| HL_6HD7_050 | No text annotation | ||
| HL_6HD7_053 | No text annotation | ||
| HL_6HD7_054 | No text annotation | ||
| HL_6HD7_055 | Externally structured | ||
| HL_6HD7_058 | No text annotation | ||
| HL_6HD7_063 | No text annotation | ||
| HL_6HD7_067 | GNRA related | ||
| HL_6HD7_070 | Externally structured | ||
| HL_6HD7_071 | No text annotation | ||
| HL_6HD7_073 | Mini UNCG | ||
| HL_6HD7_080 | tRNA D-loop | ||
| HL_6HD7_082 | Externally structured | ||
| HL_6HD7_085 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HD7_003 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6HD7_004 | 1/1/31:38, 1/1/45:53 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_6HD7_005 | 1/1/82:89, 1/1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_6HD7_006 | 1/1/123:124, 1/1/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_6HD7_007 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6HD7_011 | 1/1/337:339, 1/4/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6HD7_012 | 1/1/376:379, 1/1/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6HD7_013 | 1/1/404:411, 1/4/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_6HD7_014 | 1/1/411:412, 1/4/11:13 | Single stack bend | geometric IL_7KGA_003 NA | |
| IL_6HD7_018 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_6HD7_019 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6HD7_021 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_6HD7_022 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6HD7_024 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6HD7_026 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6HD7_027 | 1/1/805:809, 1/1/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6HD7_028 | 1/1/833:834, 1/1/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6HD7_030 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_6HD7_031 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6HD7_032 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_6HD7_033 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6HD7_035 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6HD7_036 | 1/1/991:997, 1/1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_6HD7_037 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6HD7_038 | 1/1/999:1004, 1/1/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_6HD7_039 | 1/1/1006:1009, 1/1/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_6HD7_043 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_6HD7_153 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.1 | |
| IL_6HD7_045 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6HD7_046 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_6HD7_047 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_6HD7_048 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_6HD7_049 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6HD7_050 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6HD7_051 | 1/1/1217:1226, 1/1/1283:1288 | No text annotation | ||
| IL_6HD7_054 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6HD7_055 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_6HD7_056 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | geometric IL_7EAG_005 NA | |
| IL_6HD7_057 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6HD7_058 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6HD7_147 | 1/1/1501:1505, 1/1/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_6HD7_060 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6HD7_063 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6HD7_065 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation | homologous IL_8P9A_294 IL_37467.1 | |
| IL_6HD7_066 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_6HD7_067 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_6HD7_068 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6HD7_148 | 1/1/1669:1671, 1/1/1776:1780 | No text annotation | geometric IL_6DME_003 IL_75527.1 | |
| IL_6HD7_069 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_6HD7_070 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6HD7_071 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_6HD7_073 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6HD7_074 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6HD7_075 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_74641.1 | |
| IL_6HD7_149 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6HD7_076 | 1/1/1901:1906, 1/1/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6HD7_077 | 1/1/1918:1923, 1/1/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_6HD7_078 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6HD7_085 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6HD7_086 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6HD7_087 | 1/1/2196:2199, 1/1/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6HD7_088 | 1/1/2200:2201, 1/1/2241:2244 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_6HD7_090 | 1/1/2211:2218, 1/1/2227:2234 | No text annotation | ||
| IL_6HD7_091 | 1/1/2276:2277, 1/1/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6HD7_092 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6HD7_093 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6HD7_094 | 1/1/2396:2398, 1/1/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6HD7_095 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_6HD7_096 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6HD7_097 | 1/1/2423:2425, 1/1/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_6HD7_099 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6HD7_100 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_6HD7_101 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_6HD7_155 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8CRE_109 NA | |
| IL_6HD7_103 | 1/1/2770:2773, 1/1/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_6HD7_104 | 1/1/2823:2824, 1/1/2865:2867 | Major groove platform | geometric IL_7RQB_090 NA | |
| IL_6HD7_105 | 1/1/2824:2826, 1/1/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6HD7_106 | 1/1/2826:2830, 1/1/2858:2863 | No text annotation | ||
| IL_6HD7_156 | 1/1/2834:2839, 1/1/2849:2854 | No text annotation | ||
| IL_6HD7_108 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6HD7_109 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_6HD7_110 | 1/1/2881:2882, 1/1/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6HD7_111 | 1/1/2889:2891, 1/1/2912:2914 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6HD7_152 | 1/1/2889:2892, 1/1/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_6HD7_112 | 1/1/2891:2892, 1/1/2909:2912 | Major groove platform with intercalation | geometric IL_4V9F_089 IL_94991.1 | |
| IL_6HD7_113 | 1/1/2918:2920, 1/1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6HD7_114 | 1/1/2960:2961, 1/1/2970:2972 | No text annotation | ||
| IL_6HD7_115 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6HD7_116 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6HD7_117 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6HD7_118 | 1/1/3045:3051, 1/1/3091:3096 | No text annotation | ||
| IL_6HD7_119 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_6HD7_120 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_6HD7_121 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_6HD7_125 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_6HD7_126 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_6HD7_127 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_5TBW_126 NA | |
| IL_6HD7_130 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_402D_001 NA | |
| IL_6HD7_132 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6HD7_133 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_6HD7_134 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_6HD7_135 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6HD7_137 | 1/3/15:16, 1/3/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6HD7_141 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_6HD7_142 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6HD7_143 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6HD7_144 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6HD7_145 | 1/4/68:69, 1/4/89:91 | Single bulged U | homologous IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HD7_146 | Single bulged C | ||
| IL_6HD7_001 | No text annotation | ||
| IL_6HD7_002 | Isolated non-canonical cWW pair | ||
| IL_6HD7_008 | Single stack bend | ||
| IL_6HD7_009 | No text annotation | ||
| IL_6HD7_010 | No text annotation | ||
| IL_6HD7_015 | Isolated non-canonical cWW pair | ||
| IL_6HD7_016 | No text annotation | ||
| IL_6HD7_017 | No text annotation | ||
| IL_6HD7_020 | No text annotation | ||
| IL_6HD7_023 | UAA/GAN variation | ||
| IL_6HD7_025 | Single bulged U | ||
| IL_6HD7_029 | Triple sheared | ||
| IL_6HD7_034 | No text annotation | ||
| IL_6HD7_040 | Isolated non-canonical cWW pair | ||
| IL_6HD7_041 | Other IL | ||
| IL_6HD7_042 | Isolated non-canonical cWW pair | ||
| IL_6HD7_044 | Tandem non-canonical cWW pairs | ||
| IL_6HD7_052 | No text annotation | ||
| IL_6HD7_053 | Major groove platform with extra cWW | ||
| IL_6HD7_059 | No text annotation | ||
| IL_6HD7_061 | No text annotation | ||
| IL_6HD7_062 | Single stack bend | ||
| IL_6HD7_154 | No text annotation | ||
| IL_6HD7_064 | No text annotation | ||
| IL_6HD7_072 | Kink-turn | ||
| IL_6HD7_079 | No text annotation | ||
| IL_6HD7_080 | No text annotation | ||
| IL_6HD7_081 | No text annotation | ||
| IL_6HD7_082 | No text annotation | ||
| IL_6HD7_150 | No text annotation | ||
| IL_6HD7_083 | tSH-tHW | ||
| IL_6HD7_084 | Isolated cWH basepair | ||
| IL_6HD7_151 | No text annotation | ||
| IL_6HD7_089 | No text annotation | ||
| IL_6HD7_098 | Single stack bend | ||
| IL_6HD7_102 | No text annotation | ||
| IL_6HD7_107 | No text annotation | ||
| IL_6HD7_122 | Isolated non-canonical cWW pair | ||
| IL_6HD7_123 | Isolated non-canonical cWW pair | ||
| IL_6HD7_124 | Single bulged A | ||
| IL_6HD7_128 | Isolated non-canonical cWW pair | ||
| IL_6HD7_129 | Tandem non-canonical cWW pairs | ||
| IL_6HD7_131 | Single bulged U | ||
| IL_6HD7_136 | Multiple bulged bases | ||
| IL_6HD7_138 | Minor groove platform related | ||
| IL_6HD7_139 | Minor groove platform | ||
| IL_6HD7_140 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6HD7_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_6HD7_018 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_6HD7_019 | 1/1/337:356, 1/1/363:368, 1/4/21:26 | No text annotation | ||
| J3_6HD7_002 | 1/1/368:376, 1/1/403:404, 1/4/19:21 | No text annotation | ||
| J3_6HD7_028 | 1/1/369:376, 1/1/403:412, 1/4/11:20 | No text annotation | ||
| J3_6HD7_004 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6HD7_005 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_6HD7_006 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6HD7_007 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_6HD7_009 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6HD7_010 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6HD7_022 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_8C3A_052 NA | |
| J3_6HD7_023 | 1/1/1537:1542, 1/1/1551:1560, 1/1/1579:1584 | No text annotation | ||
| J3_6HD7_011 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6HD7_024 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_6HD7_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_6HD7_025 | 1/1/2529:2533, 1/1/2546:2563, 1/1/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_6HD7_026 | 1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6HD7_013 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6HD7_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6HD7_029 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | ||
| J3_6HD7_015 | 1/1/3298:3300, 1/1/3314:3320, 1/1/3387:3390 | No text annotation | geometric J3_5TBW_069 NA | |
| J3_6HD7_017 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_6HD7_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_6HD7_002 | 1/1/185:191, 1/1/204:208, 1/1/212:214, 1/1/226:231 | No text annotation | ||
| J4_6HD7_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_6HD7_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_6HD7_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_75575.1 | |
| J4_6HD7_012 | 1/1/2130:2134, 1/1/2146:2151, 1/1/2185:2190, 1/1/2317:2322 | No text annotation | ||
| J4_6HD7_007 | 1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2276, 1/1/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_6HD7_008 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_6HD7_009 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8C3A_009 NA | |
| J4_6HD7_013 | 1/B/7:10, 1/B/25:27, 1/B/43:50, 1/B/64:66 | No text annotation | ||
| J5_6HD7_001 | 1/1/20:22, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6HD7_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | ||
| J5_6HD7_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_6HD7_004 | 1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_6HD7_005 | 1/1/2399:2406, 1/1/2815:2823, 1/1/2867:2876, 1/1/2951:2957, 1/1/2975:2980 | No text annotation | ||
| J5_6HD7_006 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_6HD7_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:333, 1/4/30:35 | No text annotation | ||
| J7_6HD7_001 | 1/1/949:956, 1/1/965:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HD7_020 | No text annotation | ||
| J3_6HD7_003 | No text annotation | ||
| J3_6HD7_021 | No text annotation | ||
| J3_6HD7_008 | No text annotation | ||
| J3_6HD7_027 | No text annotation | ||
| J3_6HD7_016 | No text annotation | ||
| J4_6HD7_006 | No text annotation | ||
| J4_6HD7_010 | No text annotation | ||
| J4_6HD7_011 | No text annotation |
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