HL_6HD7_036

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6HD7|1|1|A|1602, 6HD7|1|1|U|1606, 6HD7|1|1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_036 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.276

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6HD7|1|1|G|1599
6HD7|1|1|U|1600
6HD7|1|1|U|1601
6HD7|1|1|A|1602
6HD7|1|1|A|1603
6HD7|1|1|G|1604
6HD7|1|1|A|1605
6HD7|1|1|U|1606
6HD7|1|1|U|1607
6HD7|1|1|C|1608

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain Z

60S ribosomal protein L25

Chain i

60S ribosomal protein L34-A