HL_6HD7_040

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6HD7|1|1|C|1761, 6HD7|1|1|C|1762

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_040 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.3726

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6HD7|1|1|C|1759
6HD7|1|1|A|1760
6HD7|1|1|C|1761
6HD7|1|1|C|1762
6HD7|1|1|U|1763
6HD7|1|1|U|1764
6HD7|1|1|U|1765
6HD7|1|1|G|1766

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain W

60S ribosomal protein L22-A