HL_6HD7_045

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUUGC

Length

6 nucleotides

Bulged bases

6HD7|1|1|U|2010

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_045 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2071

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6HD7|1|1|G|2008
6HD7|1|1|C|2009
6HD7|1|1|U|2010
6HD7|1|1|U|2011
6HD7|1|1|G|2012
6HD7|1|1|C|2013

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain t

N-terminal acetyltransferase A complex subunit NAT1