HL_6HD7_052

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6HD7|1|1|A|2372, 6HD7|1|1|A|2373, 6HD7|1|1|C|2374, 6HD7|1|1|G|2376, 6HD7|1|1|G|2377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_052 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.3615

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6HD7|1|1|G|2369
6HD7|1|1|G|2370
6HD7|1|1|G|2371
6HD7|1|1|A|2372
6HD7|1|1|A|2373
6HD7|1|1|C|2374
6HD7|1|1|G|2375
6HD7|1|1|G|2376
6HD7|1|1|G|2377
6HD7|1|1|C|2378

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain g

60S ribosomal protein L32

Chain h

60S ribosomal protein L33-A