3D structure

PDB id
6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the ribosome-NatA complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
6HD7|1|1|G|3116, 6HD7|1|1|C|3120
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HD7_069 not in the Motif Atlas
Homologous match to HL_8C3A_068
Geometric discrepancy: 0.1713
The information below is about HL_8C3A_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6HD7|1|1|C|3110
6HD7|1|1|U|3111
6HD7|1|1|G|3112
6HD7|1|1|A|3113
6HD7|1|1|A|3114
6HD7|1|1|C|3115
6HD7|1|1|G|3116
6HD7|1|1|C|3117
6HD7|1|1|C|3118
6HD7|1|1|U|3119
6HD7|1|1|C|3120
6HD7|1|1|U|3121
6HD7|1|1|A|3122
6HD7|1|1|A|3123
6HD7|1|1|G|3124

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain L
60S ribosomal protein L9-A
Chain Q
60S ribosomal protein L16-A
Chain U
60S ribosomal protein L20-A
Chain o
Ubiquitin-60S ribosomal protein L40

Coloring options:


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