HL_6HD7_071

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

6HD7|1|1|A|3243, 6HD7|1|1|A|3244

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_071 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.3389

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6HD7|1|1|C|3240
6HD7|1|1|G|3241
6HD7|1|1|G|3242
6HD7|1|1|A|3243
6HD7|1|1|A|3244
6HD7|1|1|A|3245
6HD7|1|1|G|3246
6HD7|1|1|G|3247

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain Q

60S ribosomal protein L16-A