HL_6HD7_072

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_072 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.3653

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6HD7|1|1|G|3303
6HD7|1|1|U|3304
6HD7|1|1|A|3305
6HD7|1|1|U|3306
6HD7|1|1|A|3307
6HD7|1|1|C|3308
6HD7|1|1|G|3309
6HD7|1|1|A|3310
6HD7|1|1|C|3311

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain R

60S ribosomal protein L17-A