HL_6HD7_079

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6HD7|1|4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_079 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.3433

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6HD7|1|4|G|124
6HD7|1|4|U|125
6HD7|1|4|A|126
6HD7|1|4|U|127
6HD7|1|4|U|128
6HD7|1|4|C|129

Current chains

Chain 4

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA