HL_6HD7_080

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

6HD7|1|A|U|16, 6HD7|1|A|U|17, 6HD7|1|A|G|18, 6HD7|1|A|G|19, 6HD7|1|A|U|20, 6HD7|1|A|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_080 not in the Motif Atlas

Homologous match to HL_3AMU_001

Geometric discrepancy: 0.3419

The information below is about HL_3AMU_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_76842.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6HD7|1|A|C|13
6HD7|1|A|A|14
6HD7|1|A|G|15
6HD7|1|A|U|16
6HD7|1|A|U|17
6HD7|1|A|G|18
6HD7|1|A|G|19
6HD7|1|A|U|20
6HD7|1|A|A|21
6HD7|1|A|G|22

Current chains

Chain A

tRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain s

60S ribosomal protein L10