HL_6HD7_085
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUCGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HD7_085 not in the Motif Atlas
- Homologous match to HL_4WJ4_003
- Geometric discrepancy: 0.31
- The information below is about HL_4WJ4_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6HD7|1|B|G|53
6HD7|1|B|U|54
6HD7|1|B|U|55
6HD7|1|B|C|56
6HD7|1|B|G|57
6HD7|1|B|A|58
6HD7|1|B|G|59
6HD7|1|B|U|60
6HD7|1|B|C|61
Current chains
- Chain B
- P-site tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 60S ribosomal protein L42-A
- Chain M
- 60S ribosomal protein L11-A
- Chain s
- 60S ribosomal protein L10
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