HL_6HHQ_022

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6HHQ|1|1|C|959, 6HHQ|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.2251

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6HHQ|1|1|C|958
6HHQ|1|1|C|959
6HHQ|1|1|U|960
6HHQ|1|1|C|961
6HHQ|1|1|A|962
6HHQ|1|1|G|963

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AC

60S ribosomal protein L29

Chain AP

60S ribosomal protein L42-A