HL_6HHQ_046

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

6HHQ|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_046 not in the Motif Atlas

Homologous match to HL_5TBW_047

Geometric discrepancy: 0.0555

The information below is about HL_5TBW_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HHQ|1|1|A|2164
6HHQ|1|1|G|2165
6HHQ|1|1|A|2166
6HHQ|1|1|A|2167
6HHQ|1|1|A|2168
6HHQ|1|1|G|2169
6HHQ|1|1|U|2170

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain j

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L8-A

Chain v

60S ribosomal protein L15-A