HL_6HHQ_050

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6HHQ|1|1|A|2372, 6HHQ|1|1|A|2373, 6HHQ|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_050 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0441

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6HHQ|1|1|G|2369
6HHQ|1|1|G|2370
6HHQ|1|1|G|2371
6HHQ|1|1|A|2372
6HHQ|1|1|A|2373
6HHQ|1|1|C|2374
6HHQ|1|1|G|2375
6HHQ|1|1|G|2376
6HHQ|1|1|G|2377
6HHQ|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L32

Chain k

60S ribosomal protein L3