HL_6HHQ_061

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6HHQ|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_061 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0714

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6HHQ|1|1|A|2897
6HHQ|1|1|G|2898
6HHQ|1|1|C|2899
6HHQ|1|1|A|2900
6HHQ|1|1|G|2901
6HHQ|1|1|A|2902
6HHQ|1|1|A|2903
6HHQ|1|1|U|2904

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A