HL_6HHQ_066

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6HHQ|1|1|G|3116, 6HHQ|1|1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_066 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.0405

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6HHQ|1|1|C|3110
6HHQ|1|1|U|3111
6HHQ|1|1|G|3112
6HHQ|1|1|A|3113
6HHQ|1|1|A|3114
6HHQ|1|1|C|3115
6HHQ|1|1|G|3116
6HHQ|1|1|C|3117
6HHQ|1|1|C|3118
6HHQ|1|1|U|3119
6HHQ|1|1|C|3120
6HHQ|1|1|U|3121
6HHQ|1|1|A|3122
6HHQ|1|1|A|3123
6HHQ|1|1|G|3124

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A

Chain w

60S ribosomal protein L16-A