HL_6HHQ_091

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_091 not in the Motif Atlas

Geometric match to HL_4V88_200

Geometric discrepancy: 0.1153

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HHQ|1|A|C|569
6HHQ|1|A|A|570
6HHQ|1|A|G|571
6HHQ|1|A|C|572
6HHQ|1|A|C|573
6HHQ|1|A|G|574

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S23-A

Chain i

Suppressor protein STM1