HL_6HHQ_096

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_096 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.15

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6HHQ|1|A|A|900
6HHQ|1|A|G|901
6HHQ|1|A|G|902
6HHQ|1|A|U|903
6HHQ|1|A|G|904
6HHQ|1|A|A|905
6HHQ|1|A|A|906
6HHQ|1|A|A|907
6HHQ|1|A|U|908
6HHQ|1|A|U|909

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S14-B

Chain b

40S ribosomal protein S26-B