HL_6HHQ_098
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6HHQ|1|A|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HHQ_098 not in the Motif Atlas
- Geometric match to HL_4V88_208
- Geometric discrepancy: 0.1077
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6HHQ|1|A|G|997
6HHQ|1|A|A|998
6HHQ|1|A|U|999
6HHQ|1|A|C|1000
6HHQ|1|A|A|1001
6HHQ|1|A|G|1002
6HHQ|1|A|A|1003
6HHQ|1|A|U|1004
6HHQ|1|A|A|1005
6HHQ|1|A|C|1006
6HHQ|1|A|C|1007
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 40S ribosomal protein S14-B
- Chain b
- 40S ribosomal protein S26-B
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