HL_6HHQ_108

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_108 not in the Motif Atlas

Geometric match to HL_4V88_218

Geometric discrepancy: 0.1111

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HHQ|1|A|C|1501
6HHQ|1|A|G|1502
6HHQ|1|A|A|1503
6HHQ|1|A|G|1504
6HHQ|1|A|A|1505
6HHQ|1|A|G|1506

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S15

Chain T

40S ribosomal protein S18-A

Chain U

40S ribosomal protein S19-A