HL_6HHQ_118

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

6HHQ|1|AR|U|210, 6HHQ|1|AR|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_118 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0848

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6HHQ|1|AR|C|208
6HHQ|1|AR|A|209
6HHQ|1|AR|U|210
6HHQ|1|AR|A|211
6HHQ|1|AR|G|212

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain DA

60S ribosomal protein L26-A