HL_6HHQ_139

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6HHQ|1|AR|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_139 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3795

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6HHQ|1|AR|C|1239
6HHQ|1|AR|A|1240
6HHQ|1|AR|U|1241
6HHQ|1|AR|G|1242
6HHQ|1|AR|G|1243
6HHQ|1|AR|A|1244
6HHQ|1|AR|A|1245
6HHQ|1|AR|G|1246
6HHQ|1|AR|U|1247
6HHQ|1|AR|C|1248
6HHQ|1|AR|G|1249

Current chains

Chain AR

25S ribosomal RNA

Nearby chains