HL_6HHQ_167

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6HHQ|1|AR|A|2637, 6HHQ|1|AR|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_167 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0608

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6HHQ|1|AR|U|2633
6HHQ|1|AR|U|2634
6HHQ|1|AR|A|2635
6HHQ|1|AR|A|2636
6HHQ|1|AR|A|2637
6HHQ|1|AR|C|2638
6HHQ|1|AR|G|2639
6HHQ|1|AR|A|2640
6HHQ|1|AR|U|2641
6HHQ|1|AR|A|2642
6HHQ|1|AR|A|2643
6HHQ|1|AR|C|2644
6HHQ|1|AR|G|2645

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L10

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29