HL_6HHQ_185
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HHQ_185 not in the Motif Atlas
- Geometric match to HL_5TBW_186
- Geometric discrepancy: 0.0414
- The information below is about HL_5TBW_186
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6HHQ|1|AS|G|88
6HHQ|1|AS|G|89
6HHQ|1|AS|U|90
6HHQ|1|AS|G|91
6HHQ|1|AS|A|92
6HHQ|1|AS|C|93
Current chains
- Chain AS
- 5S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CI
- 60S ribosomal protein L7-A
- Chain CL
- 60S ribosomal protein L10
- Chain CU
- 60S ribosomal protein L20-A
Coloring options: