HL_6HHQ_242

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCCUUGUGG

Length

9 nucleotides

Bulged bases

6HHQ|1|sR|U|718, 6HHQ|1|sR|U|719, 6HHQ|1|sR|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_242 not in the Motif Atlas

Homologous match to HL_8P9A_235

Geometric discrepancy: 0.1711

The information below is about HL_8P9A_235

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20535.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6HHQ|1|sR|U|715
6HHQ|1|sR|C|716
6HHQ|1|sR|C|717
6HHQ|1|sR|U|718
6HHQ|1|sR|U|719
6HHQ|1|sR|G|720
6HHQ|1|sR|U|721
6HHQ|1|sR|G|722
6HHQ|1|sR|G|723

Current chains

Chain sR

18S ribosomal RNA

Nearby chains