Motif HL_20535.3 Version HL_20535.3 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_235 | 8P9A | 0.0000 | 4 | sR | SSU rRNA | U | 715 | C | 716 | C | 717 | G | 722 | G | 723 | ncWW | |
| 2 | HL_5VOE_001 | 5VOE | 0.6018 | 3 | A | Aptamer 11F7t (36-MER) | G | 15 | A | 16 | UFT | 17 | UFT | 20 | CFL | 22 | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCUUGUGG | 1 |
| GA(UFT)AA(UFT)A(CFL) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUGUG | 1 |
| A(UFT)AA(UFT)A | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.60 | Avg 0.30 | Max 0.60
Coloring options: