HL_6HMA_039

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

6HMA|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HMA_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1106

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6HMA|1|A|A|1673
6HMA|1|A|U|1674
6HMA|1|A|G|1675
6HMA|1|A|A|1676
6HMA|1|A|G|1677
6HMA|1|A|A|1678
6HMA|1|A|A|1679
6HMA|1|A|U|1680
6HMA|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains