HL_6HMA_051

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6HMA|1|A|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HMA_051 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0951

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6HMA|1|A|C|2275
6HMA|1|A|U|2276
6HMA|1|A|G|2277
6HMA|1|A|G|2278
6HMA|1|A|G|2279
6HMA|1|A|G|2280
6HMA|1|A|C|2281
6HMA|1|A|G|2282
6HMA|1|A|G|2283

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27