HL_6HMA_052

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6HMA|1|A|A|2295, 6HMA|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HMA_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.08

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6HMA|1|A|C|2291
6HMA|1|A|U|2292
6HMA|1|A|A|2293
6HMA|1|A|A|2294
6HMA|1|A|A|2295
6HMA|1|A|A|2296
6HMA|1|A|G|2297
6HMA|1|A|G|2298
6HMA|1|A|U|2299
6HMA|1|A|A|2300
6HMA|1|A|A|2301
6HMA|1|A|C|2302
6HMA|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27