HL_6HMA_053

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

6HMA|1|A|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HMA_053 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.366

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HMA|1|A|G|2330
6HMA|1|A|G|2331
6HMA|1|A|U|2332
6HMA|1|A|U|2333
6HMA|1|A|G|2334
6HMA|1|A|G|2335
6HMA|1|A|A|2336
6HMA|1|A|A|2337
6HMA|1|A|A|2338
6HMA|1|A|U|2339
6HMA|1|A|C|2340

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5