HL_6HMA_066

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

6HMA|1|A|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HMA_066 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1167

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6HMA|1|A|A|2839
6HMA|1|A|A|2840
6HMA|1|A|A|2841
6HMA|1|A|G|2842
6HMA|1|A|A|2843
6HMA|1|A|U|2844
6HMA|1|A|G|2845
6HMA|1|A|A|2846
6HMA|1|A|U|2847

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L17