HL_6HRM_042

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6HRM|1|1|G|1835, 6HRM|1|1|A|1836, 6HRM|1|1|C|1837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_042 not in the Motif Atlas

Geometric match to HL_7RQB_012

Geometric discrepancy: 0.1197

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6HRM|1|1|G|1833
6HRM|1|1|U|1834
6HRM|1|1|G|1835
6HRM|1|1|A|1836
6HRM|1|1|C|1837
6HRM|1|1|A|1838
6HRM|1|1|G|1839
6HRM|1|1|C|1840
6HRM|1|1|C|1841

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24