6HRM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HRM_001 | 1/1/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6HRM_112 | 1/1/81:88 | No text annotation | ||
| HL_6HRM_003 | 1/1/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_6HRM_004 | 1/1/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_6HRM_113 | 1/1/203:214 | No text annotation | ||
| HL_6HRM_005 | 1/1/206:213 | No text annotation | ||
| HL_6HRM_006 | 1/1/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6HRM_007 | 1/1/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_6HRM_008 | 1/1/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6HRM_009 | 1/1/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6HRM_010 | 1/1/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_6HRM_011 | 1/1/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6HRM_104 | 1/1/450:483 | No text annotation | ||
| HL_6HRM_012 | 1/1/460:472 | No text annotation | ||
| HL_6HRM_105 | 1/1/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.8 | |
| HL_6HRM_014 | 1/1/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6HRM_015 | 1/1/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6HRM_016 | 1/1/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_6HRM_017 | 1/1/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_6HRM_018 | 1/1/840:846 | No text annotation | ||
| HL_6HRM_019 | 1/1/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_6HRM_020 | 1/1/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_6HRM_021 | 1/1/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_6HRM_114 | 1/1/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_6HRM_023 | 1/1/1028:1033 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_6HRM_024 | 1/1/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.8 | |
| HL_6HRM_025 | 1/1/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6HRM_026 | 1/1/1133:1141 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_6HRM_027 | 1/1/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_6HRM_028 | 1/1/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_6HRM_029 | 1/1/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_6HRM_030 | 1/1/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6HRM_031 | 1/1/1501:1506 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6HRM_032 | 1/1/1565:1574 | No text annotation | geometric HL_5J7L_134 HL_35677.3 | |
| HL_6HRM_033 | 1/1/1593:1601 | No text annotation | geometric HL_5J7L_135 HL_80241.1 | |
| HL_6HRM_034 | 1/1/1629:1634 | No text annotation | geometric HL_5J7L_136 HL_82710.2 | |
| HL_6HRM_035 | 1/1/1643:1648 | UNCG | geometric HL_6QN3_001 HL_34617.5 | |
| HL_6HRM_036 | 1/1/1664:1674 | No text annotation | geometric HL_5J7L_138 HL_68257.1 | |
| HL_6HRM_037 | 1/1/1700:1707 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_6HRM_038 | 1/1/1731:1736 | No text annotation | geometric HL_5J7L_140 HL_62934.1 | |
| HL_6HRM_039 | 1/1/1752:1758 | No text annotation | geometric HL_5J7L_141 HL_37369.2 | |
| HL_6HRM_040 | 1/1/1811:1818 | T-loop with 1 bulged base | geometric HL_7A0S_010 HL_01609.3 | |
| HL_6HRM_041 | 1/1/1825:1829 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6HRM_042 | 1/1/1833:1841 | T-loop with unstacked turn | geometric HL_7RQB_012 NA | |
| HL_6HRM_043 | 1/1/1888:1898 | No text annotation | geometric HL_5J7L_145 HL_91503.7 | |
| HL_6HRM_044 | 1/1/1916:1923 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.3 | |
| HL_6HRM_045 | 1/1/1968:1973 | GNRA | geometric HL_3G9C_008 NA | |
| HL_6HRM_046 | 1/1/1993:1999 | GNRA | geometric HL_5J7L_148 HL_37824.8 | |
| HL_6HRM_047 | 1/1/2050:2055 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6HRM_048 | 1/1/2072:2081 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
| HL_6HRM_049 | 1/1/2117:2123 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_6HRM_050 | 1/1/2135:2140 | GNRA | geometric HL_5J7L_152 HL_37824.8 | |
| HL_6HRM_051 | 1/1/2147:2153 | No text annotation | geometric HL_5J7L_153 HL_13529.1 | |
| HL_6HRM_052 | 1/1/2218:2225 | GNRA wlth tandem sheared | geometric HL_5J7L_154 HL_81538.2 | |
| HL_6HRM_053 | 1/1/2250:2259 | No text annotation | geometric HL_7A0S_022 HL_88205.2 | |
| HL_6HRM_054 | 1/1/2285:2291 | No text annotation | geometric HL_7RQB_024 NA | |
| HL_6HRM_055 | 1/1/2332:2337 | No text annotation | geometric HL_7RQB_025 NA | |
| HL_6HRM_115 | 1/1/2381:2408 | No text annotation | ||
| HL_6HRM_056 | 1/1/2391:2397 | No text annotation | geometric HL_4LFB_004 HL_48417.6 | |
| HL_6HRM_108 | 1/1/2461:2468 | GNRA | geometric HL_5J7L_211 HL_37824.8 | |
| HL_6HRM_058 | 1/1/2484:2491 | No text annotation | geometric HL_5J7L_160 HL_42998.2 | |
| HL_6HRM_116 | 1/1/2570:2580 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_6HRM_060 | 1/1/2597:2606 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6HRM_117 | 1/1/2674:2687 | No text annotation | ||
| HL_6HRM_061 | 1/1/2678:2683 | No text annotation | ||
| HL_6HRM_062 | 1/1/2728:2733 | GNRA | geometric HL_5J7L_164 HL_37824.8 | |
| HL_6HRM_063 | 1/1/2787:2795 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 HL_28252.9 | |
| HL_6HRM_064 | 1/1/2830:2836 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 HL_57176.2 | |
| HL_6HRM_065 | 1/1/2869:2874 | GNRA | geometric HL_5J7L_167 HL_37824.8 | |
| HL_6HRM_066 | 1/1/2895:2904 | No text annotation | geometric HL_4V9F_037 HL_81545.2 | |
| HL_6HRM_067 | 1/1/2957:2965 | Mini UNCG with extended bulge | geometric HL_7A0S_017 HL_48778.2 | |
| HL_6HRM_068 | 1/1/2998:3004 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 HL_57176.2 | |
| HL_6HRM_110 | 1/1/3039:3044 | UNCG | geometric HL_4LFB_011 HL_34617.5 | |
| HL_6HRM_070 | 1/1/3071:3074 | Mini UNCG | geometric HL_7A0S_039 HL_48778.2 | |
| HL_6HRM_071 | 1/1/3118:3125 | No text annotation | geometric HL_4WF9_038 HL_89567.2 | |
| HL_6HRM_072 | 1/1/3136:3142 | GNRA | geometric HL_5J7L_174 HL_37824.8 | |
| HL_6HRM_073 | 1/1/3197:3202 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_6HRM_074 | 1/1/3233:3239 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_6HRM_075 | 1/1/3258:3262 | No text annotation | geometric HL_4V9F_046 HL_80709.3 | |
| HL_6HRM_076 | 1/1/3283:3293 | No text annotation | geometric HL_5J7L_178 HL_01962.2 | |
| HL_6HRM_077 | 1/1/3312:3317 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_6HRM_078 | 1/1/3374:3379 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_6HRM_079 | 1/1/3416:3426 | No text annotation | geometric HL_5J7L_181 HL_25847.2 | |
| HL_6HRM_080 | 1/1/3455:3463 | No text annotation | geometric HL_5J7L_182 HL_20167.2 | |
| HL_6HRM_081 | 1/1/3533:3542 | No text annotation | geometric HL_4WF9_047 HL_61996.3 | |
| HL_6HRM_118 | 1/1/3649:3654 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_6HRM_083 | 1/1/3715:3721 | No text annotation | geometric HL_5J7L_185 HL_49922.4 | |
| HL_6HRM_084 | 1/1/3754:3762 | No text annotation | geometric HL_4WF9_049 HL_85367.2 | |
| HL_6HRM_085 | 1/1/3770:3782 | No text annotation | geometric HL_5J7L_187 HL_91939.2 | |
| HL_6HRM_119 | 1/1/3810:3818 | No text annotation | geometric HL_9DFE_198 HL_50860.2 | |
| HL_6HRM_087 | 1/1/3830:3837 | Pseudoknot geometry | geometric HL_5J7L_189 HL_93324.4 | |
| HL_6HRM_088 | 1/1/3862:3867 | GNRA | geometric HL_5J7L_190 HL_37824.8 | |
| HL_6HRM_089 | 1/1/3880:3885 | GNRA | geometric HL_5J7L_191 HL_37824.8 | |
| HL_6HRM_090 | 1/1/3910:3919 | No text annotation | geometric HL_5J7L_192 HL_53454.2 | |
| HL_6HRM_091 | 1/1/3977:3985 | No text annotation | geometric HL_4V9F_062 HL_32735.2 | |
| HL_6HRM_092 | 1/1/4034:4041 | GNRA variation | geometric HL_5J7L_194 HL_31585.4 | |
| HL_6HRM_093 | 1/1/4057:4063 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6HRM_094 | 1/1/4100:4105 | GNRA | geometric HL_4V9F_065 HL_37824.8 | |
| HL_6HRM_095 | 1/1/4164:4169 | GNRA | geometric HL_5J7L_197 HL_37824.8 | |
| HL_6HRM_096 | 1/1/4207:4212 | Ribsomal LSU H95 | geometric HL_5J7L_198 HL_65794.5 | |
| HL_6HRM_097 | 1/1/4251:4265 | No text annotation | geometric HL_5J7L_199 HL_74055.2 | |
| HL_6HRM_098 | 1/1/4301:4307 | UNCG variation | geometric HL_5J7L_200 HL_08100.1 | |
| HL_6HRM_099 | 1/1/4325:4333 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_6HRM_100 | 1/1/4431:4436 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_6HRM_101 | 1/3/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_6HRM_102 | 1/3/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HRM_002 | No text annotation | ||
| HL_6HRM_103 | No text annotation | ||
| HL_6HRM_013 | No text annotation | ||
| HL_6HRM_106 | No text annotation | ||
| HL_6HRM_022 | No text annotation | ||
| HL_6HRM_107 | No text annotation | ||
| HL_6HRM_057 | tRNA anticodon loop | ||
| HL_6HRM_059 | No text annotation | ||
| HL_6HRM_109 | No text annotation | ||
| HL_6HRM_069 | No text annotation | ||
| HL_6HRM_082 | No text annotation | ||
| HL_6HRM_111 | No text annotation | ||
| HL_6HRM_086 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HRM_001 | 1/1/30:32, 1/1/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_6HRM_002 | 1/1/44:45, 1/1/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_6HRM_003 | 1/1/47:52, 1/1/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_6HRM_004 | 1/1/54:56, 1/1/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6HRM_005 | 1/1/63:66, 1/1/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_6HRM_006 | 1/1/67:69, 1/1/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_6HRM_197 | 1/1/70:76, 1/1/93:98 | No text annotation | ||
| IL_6HRM_008 | 1/1/128:131, 1/1/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_6HRM_009 | 1/1/132:136, 1/1/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_6HRM_010 | 1/1/144:146, 1/1/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_6HRM_011 | 1/1/147:153, 1/1/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_6HRM_012 | 1/1/202:206, 1/1/213:215 | No text annotation | ||
| IL_6HRM_013 | 1/1/242:247, 1/1/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_6HRM_014 | 1/1/249:252, 1/1/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6HRM_015 | 1/1/292:293, 1/1/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6HRM_016 | 1/1/367:369, 1/1/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_6HRM_017 | 1/1/371:375, 1/1/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6HRM_018 | 1/1/375:376, 1/1/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
| IL_6HRM_019 | 1/1/409:416, 1/1/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_6HRM_020 | 1/1/440:445, 1/1/489:497 | No text annotation | ||
| IL_6HRM_021 | 1/1/446:450, 1/1/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_6HRM_022 | 1/1/504:511, 1/1/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_6HRM_023 | 1/1/515:521, 1/1/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6HRM_024 | 1/1/569:575, 1/1/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6HRM_025 | 1/1/580:584, 1/1/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6HRM_026 | 1/1/594:596, 1/1/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_6HRM_027 | 1/1/597:598, 1/1/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_6HRM_028 | 1/1/605:612, 1/1/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6HRM_029 | 1/1/654:655, 1/1/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_6HRM_030 | 1/1/659:660, 1/1/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_6HRM_031 | 1/1/662:666, 1/1/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6HRM_175 | 1/1/673:677, 1/1/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_6HRM_033 | 1/1/684:688, 1/1/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_6HRM_034 | 1/1/774:778, 1/1/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6HRM_035 | 1/1/779:783, 1/1/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_6HRM_036 | 1/1/887:894, 1/1/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6HRM_037 | 1/1/922:923, 1/1/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_6HRM_038 | 1/1/925:927, 1/1/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_6HRM_039 | 1/1/933:935, 1/1/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_6HRM_040 | 1/1/953:954, 1/1/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6HRM_041 | 1/1/993:997, 1/1/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_6HRM_042 | 1/1/998:1002, 1/1/1038:1043 | No text annotation | ||
| IL_6HRM_176 | 1/1/1003:1006, 1/1/1023:1037 | No text annotation | ||
| IL_6HRM_043 | 1/1/1048:1050, 1/1/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_6HRM_177 | 1/1/1052:1056, 1/1/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6HRM_045 | 1/1/1057:1058, 1/1/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6HRM_046 | 1/1/1060:1061, 1/1/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.7 | |
| IL_6HRM_047 | 1/1/1061:1063, 1/1/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_6HRM_048 | 1/1/1124:1128, 1/1/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_6HRM_198 | 1/1/1129:1132, 1/1/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_6HRM_050 | 1/1/1158:1161, 1/1/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_42032.1 | |
| IL_6HRM_051 | 1/1/1247:1253, 1/1/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6HRM_199 | 1/1/1255:1258, 1/1/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6HRM_053 | 1/1/1259:1263, 1/1/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_6HRM_054 | 1/1/1303:1308, 1/1/1329:1334 | No text annotation | geometric IL_5J7L_057 IL_85536.2 | |
| IL_6HRM_055 | 1/1/1399:1401, 1/1/4417:4420 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_6HRM_056 | 1/1/1401:1404, 1/1/4413:4417 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6HRM_181 | 1/1/1405:1407, 1/1/4410:4412 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_6HRM_182 | 1/1/1407:1409, 1/1/4407:4410 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6HRM_058 | 1/1/1412:1414, 1/1/4402:4404 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6HRM_059 | 1/1/1416:1419, 1/1/4397:4400 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6HRM_060 | 1/1/1430:1435, 1/1/4382:4386 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_6HRM_061 | 1/1/1440:1442, 1/1/4376:4377 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_6HRM_062 | 1/1/1445:1448, 1/1/4371:4373 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_6HRM_183 | 1/1/1449:1467, 1/1/4353:4370 | No text annotation | ||
| IL_6HRM_063 | 1/1/1462:1467, 1/1/4353:4358 | No text annotation | ||
| IL_6HRM_064 | 1/1/1468:1472, 1/1/4349:4352 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 IL_64231.5 | |
| IL_6HRM_065 | 1/1/1476:1478, 1/1/4344:4345 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_6HRM_066 | 1/1/1487:1490, 1/1/4312:4317 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_6HRM_067 | 1/1/1530:1536, 1/1/2016:2022 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_6HRM_068 | 1/1/1542:1543, 1/1/1948:1950 | Single bulged A | geometric IL_7RQB_002 NA | |
| IL_6HRM_069 | 1/1/1549:1550, 1/1/1940:1942 | Minor groove platform | geometric IL_5J7L_247 IL_51454.3 | |
| IL_6HRM_070 | 1/1/1587:1591, 1/1/1603:1611 | No text annotation | geometric IL_5J7L_248 IL_37015.1 | |
| IL_6HRM_071 | 1/1/1689:1690, 1/1/1718:1720 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6HRM_072 | 1/1/1694:1700, 1/1/1707:1714 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_6HRM_073 | 1/1/1745:1751, 1/1/1759:1764 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 IL_26307.2 | |
| IL_6HRM_074 | 1/1/1775:1777, 1/1/1872:1876 | No text annotation | geometric IL_5J7L_252 IL_47972.1 | |
| IL_6HRM_075 | 1/1/1780:1787, 1/1/1865:1869 | No text annotation | geometric IL_5J7L_253 IL_77870.1 | |
| IL_6HRM_076 | 1/1/1799:1801, 1/1/1849:1853 | No text annotation | geometric IL_5J7L_254 IL_69440.3 | |
| IL_6HRM_077 | 1/1/1987:1990, 1/1/2002:2015 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_6HRM_078 | 1/1/2042:2045, 1/1/2060:2063 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_6HRM_079 | 1/1/2070:2072, 1/1/2081:2083 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_6HRM_080 | 1/1/2112:2116, 1/1/2124:2128 | AAA cross-strand stack | geometric IL_5J7L_258 IL_66798.2 | |
| IL_6HRM_081 | 1/1/2178:2180, 1/1/2312:2314 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6HRM_082 | 1/1/2180:2184, 1/1/2305:2312 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_6HRM_083 | 1/1/2203:2204, 1/1/2269:2271 | Single bulged A | geometric IL_5J7L_261 IL_31462.7 | |
| IL_6HRM_084 | 1/1/2208:2209, 1/1/2234:2236 | Single bulged G | geometric IL_5J7L_262 IL_00225.14 | |
| IL_6HRM_085 | 1/1/2209:2213, 1/1/2230:2234 | Triple sheared | geometric IL_4WF9_024 IL_50730.2 | |
| IL_6HRM_086 | 1/1/2244:2246, 1/1/2263:2264 | Major groove platform | geometric IL_5J7L_264 IL_48076.6 | |
| IL_6HRM_087 | 1/1/2281:2283, 1/1/2293:2297 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_6HRM_088 | 1/1/2350:2353, 1/1/2439:2440 | 90 degree turn | geometric IL_5J7L_267 IL_90729.1 | |
| IL_6HRM_185 | 1/1/2350:2354, 1/1/2436:2440 | No text annotation | geometric IL_5J7L_399 IL_96236.1 | |
| IL_6HRM_089 | 1/1/2353:2354, 1/1/2436:2439 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_6HRM_090 | 1/1/2356:2357, 1/1/2432:2434 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_6HRM_091 | 1/1/2362:2368, 1/1/2421:2427 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_6HRM_092 | 1/1/2368:2369, 1/1/2419:2421 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
| IL_6HRM_093 | 1/1/2370:2374, 1/1/2415:2418 | C-loop with bulged stacked A's | geometric IL_5J7L_272 IL_26222.2 | |
| IL_6HRM_094 | 1/1/2376:2378, 1/1/2411:2413 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 IL_28037.2 | |
| IL_6HRM_095 | 1/1/2381:2386, 1/1/2403:2408 | No text annotation | geometric IL_8P9A_410 IL_85536.2 | |
| IL_6HRM_096 | 1/1/2386:2391, 1/1/2397:2403 | No text annotation | ||
| IL_6HRM_097 | 1/1/2500:2502, 1/1/2665:2666 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_6HRM_098 | 1/1/2504:2508, 1/1/2659:2663 | UAA/GAN | geometric IL_5J7L_277 IL_38507.2 | |
| IL_6HRM_099 | 1/1/2510:2517, 1/1/2656:2657 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_6HRM_100 | 1/1/2517:2519, 1/1/2655:2656 | Single bulged U | geometric IL_4WF9_038 IL_89505.4 | |
| IL_6HRM_101 | 1/1/2524:2530, 1/1/2646:2650 | Kink-turn related | geometric IL_5J7L_280 IL_57188.5 | |
| IL_6HRM_102 | 1/1/2530:2536, 1/1/2630:2646 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6HRM_103 | 1/1/2537:2540, 1/1/2627:2629 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 IL_57744.1 | |
| IL_6HRM_104 | 1/1/2541:2547, 1/1/2620:2626 | No text annotation | ||
| IL_6HRM_200 | 1/1/2541:2559, 1/1/2612:2626 | No text annotation | ||
| IL_6HRM_105 | 1/1/2593:2597, 1/1/2606:2608 | No text annotation | homologous IL_9DFE_043 NA | |
| IL_6HRM_106 | 1/1/2702:2704, 1/1/2753:2756 | Isolated cWS basepair | geometric IL_4WF9_044 IL_42997.3 | |
| IL_6HRM_107 | 1/1/2708:2712, 1/1/2746:2749 | No text annotation | geometric IL_5J7L_287 IL_91920.1 | |
| IL_6HRM_108 | 1/1/2714:2721, 1/1/2740:2744 | Kink-turn | geometric IL_5J7L_288 IL_70923.9 | |
| IL_6HRM_109 | 1/1/2768:2775, 1/1/3517:3523 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 IL_04346.10 | |
| IL_6HRM_110 | 1/1/2816:2819, 1/1/3109:3110 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_6HRM_111 | 1/1/2825:2829, 1/1/2837:2839 | C-loop | geometric IL_5J7L_291 IL_63596.11 | |
| IL_6HRM_112 | 1/1/2857:2861, 1/1/2882:2886 | UAA/GAN | geometric IL_5J7L_292 IL_89021.2 | |
| IL_6HRM_113 | 1/1/2863:2867, 1/1/2876:2880 | tSH-tHW-tHS | geometric IL_5J7L_293 IL_17136.7 | |
| IL_6HRM_114 | 1/1/2921:2922, 1/1/3088:3093 | No text annotation | geometric IL_5J7L_294 IL_87211.1 | |
| IL_6HRM_115 | 1/1/2923:2927, 1/1/3083:3087 | UAA/GAN | geometric IL_5J7L_295 IL_38507.2 | |
| IL_6HRM_116 | 1/1/2938:2941, 1/1/3063:3067 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 IL_58112.2 | |
| IL_6HRM_117 | 1/1/2943:2946, 1/1/3057:3061 | tSH-tHW | geometric IL_5J7L_297 IL_99646.2 | |
| IL_6HRM_118 | 1/1/2956:2957, 1/1/2965:2967 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_6HRM_119 | 1/1/2974:2977, 1/1/3026:3030 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
| IL_6HRM_120 | 1/1/2980:2984, 1/1/3019:3023 | tSH-tHW-tHS | geometric IL_5J7L_300 IL_38862.4 | |
| IL_6HRM_121 | 1/1/2987:2988, 1/1/3013:3016 | 180 degree turn | geometric IL_5J7L_301 IL_00881.1 | |
| IL_6HRM_122 | 1/1/2995:2997, 1/1/3005:3006 | Single bulged A | geometric IL_5J7L_302 IL_31462.7 | |
| IL_6HRM_123 | 1/1/3032:3035, 1/1/3048:3052 | UAA/GAN variation | geometric IL_5J7L_303 IL_23774.1 | |
| IL_6HRM_124 | 1/1/3157:3162, 1/1/3510:3512 | No text annotation | geometric IL_5J7L_304 IL_12566.4 | |
| IL_6HRM_125 | 1/1/3169:3171, 1/1/3501:3503 | Isolated tWW turn | geometric IL_5J7L_305 IL_67095.2 | |
| IL_6HRM_126 | 1/1/3172:3175, 1/1/3499:3500 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
| IL_6HRM_187 | 1/1/3172:3180, 1/1/3496:3500 | No text annotation | geometric IL_4WF9_117 IL_22854.4 | |
| IL_6HRM_127 | 1/1/3175:3180, 1/1/3496:3499 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_6HRM_128 | 1/1/3192:3197, 1/1/3202:3208 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_6HRM_129 | 1/1/3218:3224, 1/1/3248:3252 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_5J7L_309 IL_88269.4 | |
| IL_6HRM_130 | 1/1/3226:3230, 1/1/3242:3246 | Triple sheared | geometric IL_5J7L_310 IL_50730.2 | |
| IL_6HRM_131 | 1/1/3276:3277, 1/1/3486:3488 | Single bulged A | geometric IL_5J7L_312 IL_31462.7 | |
| IL_6HRM_132 | 1/1/3304:3310, 1/1/3319:3327 | Kink-turn related | geometric IL_5J7L_313 IL_17069.5 | |
| IL_6HRM_133 | 1/1/3343:3346, 1/1/3408:3409 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 IL_95583.2 | |
| IL_6HRM_134 | 1/1/3347:3348, 1/1/3404:3407 | Major groove intercalation | geometric IL_4V9F_067 IL_82107.5 | |
| IL_6HRM_135 | 1/1/3352:3355, 1/1/3399:3400 | Major groove minor groove platform; mini C-loop | geometric IL_1S03_003 IL_68140.4 | |
| IL_6HRM_189 | 1/1/3357:3366, 1/1/3388:3397 | No text annotation | geometric IL_5J7L_387 IL_61249.1 | |
| IL_6HRM_136 | 1/1/3370:3373, 1/1/3380:3384 | UAA/GAN related | geometric IL_5J7L_317 IL_77691.5 | |
| IL_6HRM_137 | 1/1/3439:3440, 1/1/3470:3473 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_6HRM_138 | 1/1/3440:3451, 1/1/3467:3470 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_6HRM_139 | 1/1/3556:3558, 1/1/4123:4124 | Major groove platform | geometric IL_7RQB_078 NA | |
| IL_6HRM_140 | 1/1/3560:3562, 1/1/4118:4121 | No text annotation | geometric IL_5J7L_321 IL_83389.2 | |
| IL_6HRM_190 | 1/1/3573:3575, 1/1/3948:3949 | Single bulged U | geometric IL_4WF9_080 IL_89505.4 | |
| IL_6HRM_143 | 1/1/3576:3577, 1/1/3944:3947 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_6HRM_144 | 1/1/3587:3589, 1/1/3742:3745 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 IL_85599.2 | |
| IL_6HRM_145 | 1/1/3591:3593, 1/1/3738:3740 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 IL_28037.2 | |
| IL_6HRM_191 | 1/1/3604:3613, 1/1/3688:3697 | No text annotation | ||
| IL_6HRM_146 | 1/1/3614:3616, 1/1/3685:3687 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_6HRM_192 | 1/1/3614:3629, 1/1/3681:3687 | No text annotation | ||
| IL_6HRM_147 | 1/1/3616:3629, 1/1/3681:3685 | No text annotation | ||
| IL_6HRM_148 | 1/1/3629:3633, 1/1/3667:3681 | No text annotation | ||
| IL_6HRM_201 | 1/1/3635:3642, 1/1/3661:3665 | Kink-turn | geometric IL_5J7L_330 IL_70923.9 | |
| IL_6HRM_150 | 1/1/3708:3710, 1/1/3726:3727 | Single bulged U | geometric IL_5J7L_331 IL_89505.4 | |
| IL_6HRM_151 | 1/1/3856:3859, 1/1/3870:3873 | Double sheared | geometric IL_5J7L_333 IL_09705.15 | |
| IL_6HRM_152 | 1/1/3907:3909, 1/1/3920:3921 | No text annotation | ||
| IL_6HRM_193 | 1/1/3959:3960, 1/1/4004:4006 | Single stack bend | geometric IL_5J7L_391 IL_26793.1 | |
| IL_6HRM_194 | 1/1/3960:3961, 1/1/4002:4004 | Major groove platform | geometric IL_5J7L_392 IL_48076.6 | |
| IL_6HRM_195 | 1/1/3963:3965, 1/1/3999:4000 | Major groove platform | geometric IL_5J7L_393 IL_07039.3 | |
| IL_6HRM_155 | 1/1/3965:3967, 1/1/3995:3999 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.3 | |
| IL_6HRM_156 | 1/1/3972:3976, 1/1/3986:3990 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 IL_17948.2 | |
| IL_6HRM_196 | 1/1/4013:4014, 1/1/4086:4088 | Major groove platform | geometric IL_5J7L_394 IL_07039.3 | |
| IL_6HRM_158 | 1/1/4016:4018, 1/1/4080:4084 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_6HRM_159 | 1/1/4018:4019, 1/1/4077:4080 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_6HRM_160 | 1/1/4028:4029, 1/1/4046:4049 | Major groove platform with intercalation | geometric IL_7A0S_091 IL_02555.1 | |
| IL_6HRM_162 | 1/1/4097:4098, 1/1/4107:4109 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6HRM_163 | 1/1/4142:4146, 1/1/4280:4288 | tSH-tHS-tHW | geometric IL_5J7L_345 IL_04638.3 | |
| IL_6HRM_164 | 1/1/4158:4164, 1/1/4169:4174 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_6HRM_165 | 1/1/4186:4190, 1/1/4231:4233 | C-loop | geometric IL_5J7L_347 IL_63596.11 | |
| IL_6HRM_166 | 1/1/4193:4197, 1/1/4224:4228 | UAA/GAN related, with intercalation | geometric IL_5J7L_348 IL_23774.1 | |
| IL_6HRM_167 | 1/1/4201:4202, 1/1/4217:4220 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
| IL_6HRM_168 | 1/1/4243:4248, 1/1/4268:4273 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_6HRM_169 | 1/3/1:2, 1/3/118:120 | No text annotation | ||
| IL_6HRM_170 | 1/3/17:18, 1/3/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
| IL_6HRM_171 | 1/3/23:28, 1/3/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6HRM_172 | 1/3/30:31, 1/3/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_6HRM_173 | 1/3/34:38, 1/3/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.11 | |
| IL_6HRM_174 | 1/3/71:79, 1/3/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HRM_007 | No text annotation | ||
| IL_6HRM_032 | No text annotation | ||
| IL_6HRM_044 | No text annotation | ||
| IL_6HRM_049 | No text annotation | ||
| IL_6HRM_178 | No text annotation | ||
| IL_6HRM_179 | No text annotation | ||
| IL_6HRM_052 | No text annotation | ||
| IL_6HRM_180 | No text annotation | ||
| IL_6HRM_057 | Partly complementary | ||
| IL_6HRM_184 | No text annotation | ||
| IL_6HRM_186 | No text annotation | ||
| IL_6HRM_188 | Triple sheared with non-canonical cWW | ||
| IL_6HRM_141 | Isolated non-canonical cWW pair | ||
| IL_6HRM_142 | Isolated non-canonical cWW pair | ||
| IL_6HRM_149 | No text annotation | ||
| IL_6HRM_153 | No text annotation | ||
| IL_6HRM_154 | Major groove platform with extra pair | ||
| IL_6HRM_157 | Major groove platform with extra pair | ||
| IL_6HRM_161 | Not an internal loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6HRM_001 | 1/1/46:47, 1/1/361:367, 1/1/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6HRM_027 | 1/1/46:52, 1/1/359:367, 1/1/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_6HRM_002 | 1/1/586:588, 1/1/651:654, 1/1/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6HRM_028 | 1/1/586:588, 1/1/651:655, 1/1/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_6HRM_003 | 1/1/672:673, 1/1/717:725, 1/1/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6HRM_004 | 1/1/826:829, 1/1/857:861, 1/1/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6HRM_029 | 1/1/936:939, 1/1/1344:1350, 1/1/1372:1379 | No text annotation | homologous J3_5J7L_052 J3_25303.4 | |
| J3_6HRM_005 | 1/1/943:946, 1/1/1235:1237, 1/1/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_6HRM_006 | 1/1/955:962, 1/1/973:984, 1/1/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_6HRM_007 | 1/1/990:993, 1/1/1045:1047, 1/1/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6HRM_030 | 1/1/990:997, 1/1/1044:1047, 1/1/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_6HRM_008 | 1/1/1002:1006, 1/1/1023:1028, 1/1/1033:1038 | No text annotation | ||
| J3_6HRM_009 | 1/1/1063:1068, 1/1/1107:1113, 1/1/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_6HRM_038 | 1/1/1073:1074, 1/1/1083:1086, 1/1/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6HRM_011 | 1/1/1116:1118, 1/1/1155:1158, 1/1/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_6HRM_039 | 1/1/1116:1118, 1/1/1155:1161, 1/1/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_6HRM_012 | 1/1/1237:1241, 1/1/1296:1303, 1/1/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J3_6HRM_013 | 1/1/1480:1486, 1/1/4318:4321, 1/1/4337:4342 | No text annotation | geometric J3_5J7L_048 J3_64069.1 | |
| J3_6HRM_014 | 1/1/1490:1492, 1/1/4295:4297, 1/1/4311:4312 | No text annotation | geometric J3_5J7L_047 J3_30104.1 | |
| J3_6HRM_015 | 1/1/1536:1537, 1/1/1980:1987, 1/1/2015:2016 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
| J3_6HRM_032 | 1/1/1536:1537, 1/1/1980:1990, 1/1/2002:2016 | No text annotation | geometric J3_5J7L_066 J3_92134.2 | |
| J3_6HRM_033 | 1/1/1538:1541, 1/1/1951:1967, 1/1/1974:1979 | No text annotation | geometric J3_5J7L_067 J3_30040.2 | |
| J3_6HRM_016 | 1/1/1562:1563, 1/1/1576:1582, 1/1/1616:1620 | No text annotation | geometric J3_4V9F_014 J3_35667.2 | |
| J3_6HRM_034 | 1/1/1803:1807, 1/1/1822:1831, 1/1/1843:1847 | No text annotation | geometric J3_5J7L_068 J3_46299.2 | |
| J3_6HRM_017 | 1/1/2189:2195, 1/1/2279:2281, 1/1/2297:2300 | No text annotation | geometric J3_5J7L_038 J3_64189.2 | |
| J3_6HRM_018 | 1/1/2204:2206, 1/1/2238:2242, 1/1/2266:2269 | No text annotation | geometric J3_8VTW_002 NA | |
| J3_6HRM_019 | 1/1/2560:2568, 1/1/2582:2593, 1/1/2608:2611 | No text annotation | ||
| J3_6HRM_035 | 1/1/2560:2568, 1/1/2582:2597, 1/1/2606:2611 | No text annotation | ||
| J3_6HRM_020 | 1/1/2804:2809, 1/1/3131:3133, 1/1/3145:3148 | No text annotation | geometric J3_5J7L_041 J3_32852.6 | |
| J3_6HRM_021 | 1/1/2812:2815, 1/1/3111:3117, 1/1/3126:3128 | No text annotation | geometric J3_7A0S_007 J3_71677.1 | |
| J3_6HRM_022 | 1/1/2850:2855, 1/1/2888:2891, 1/1/2908:2909 | No text annotation | geometric J3_5J7L_043 J3_92705.1 | |
| J3_6HRM_036 | 1/1/2930:2935, 1/1/3070:3071, 1/1/3074:3080 | No text annotation | geometric J3_5J7L_069 J3_34864.2 | |
| J3_6HRM_023 | 1/1/3597:3599, 1/1/3702:3706, 1/1/3729:3734 | Kink-turn 3-way junction | geometric J3_5J7L_044 J3_89368.5 | |
| J3_6HRM_037 | 1/1/3788:3790, 1/1/3890:3901, 1/1/3927:3933 | No text annotation | geometric J3_5J7L_070 J3_20992.1 | |
| J3_6HRM_024 | 1/1/3801:3805, 1/1/3823:3829, 1/1/3838:3843 | No text annotation | geometric J3_5J7L_071 J3_44961.1 | |
| J3_6HRM_025 | 1/1/4023:4026, 1/1/4051:4053, 1/1/4067:4073 | No text annotation | geometric J3_5J7L_046 J3_32601.5 | |
| J3_6HRM_026 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_6HRM_001 | 1/1/115:122, 1/1/239:240, 1/1/286:289, 1/1/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_6HRM_002 | 1/1/142:144, 1/1/178:184, 1/1/193:198, 1/1/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_6HRM_003 | 1/1/575:577, 1/1/764:769, 1/1/810:821, 1/1/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_6HRM_004 | 1/1/1774:1775, 1/1/1876:1881, 1/1/1905:1912, 1/1/1927:1930 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_6HRM_005 | 1/1/1803:1807, 1/1/1822:1825, 1/1/1829:1831, 1/1/1843:1847 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_6HRM_006 | 1/1/2107:2110, 1/1/2130:2134, 1/1/2141:2144, 1/1/2156:2162 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6HRM_007 | 1/1/2776:2782, 1/1/2800:2801, 1/1/3151:3154, 1/1/3515:3516 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6HRM_008 | 1/1/2816:2820, 1/1/2844:2849, 1/1/2910:2911, 1/1/3103:3110 | No text annotation | ||
| J4_6HRM_009 | 1/1/2819:2820, 1/1/2844:2849, 1/1/2910:2911, 1/1/3103:3109 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_6HRM_010 | 1/1/2950:2951, 1/1/2972:2973, 1/1/3031:3032, 1/1/3052:3053 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6HRM_011 | 1/1/3278:3282, 1/1/3294:3298, 1/1/3333:3336, 1/1/3481:3485 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6HRM_012 | 1/1/3339:3341, 1/1/3411:3412, 1/1/3430:3439, 1/1/3473:3478 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6HRM_013 | 1/1/3791:3795, 1/1/3849:3853, 1/1/3876:3878, 1/1/3887:3889 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_6HRM_014 | 1/1/4149:4152, 1/1/4180:4182, 1/1/4237:4241, 1/1/4275:4277 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_6HRM_001 | 1/1/36:39, 1/1/403:406, 1/1/436:450, 1/1/483:500, 1/1/545:548 | No text annotation | ||
| J5_6HRM_002 | 1/1/58:61, 1/1/106:113, 1/1/314:316, 1/1/337:339, 1/1/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_6HRM_003 | 1/1/1553:1560, 1/1/1622:1627, 1/1/1636:1637, 1/1/1654:1656, 1/1/1682:1684 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6HRM_004 | 1/1/2037:2039, 1/1/2066:2070, 1/1/2083:2085, 1/1/2767:2768, 1/1/3523:3524 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_6HRM_005 | 1/1/2090:2095, 1/1/2174:2177, 1/1/2315:2318, 1/1/2701:2702, 1/1/2756:2762 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_6HRM_006 | 1/1/3180:3188, 1/1/3212:3213, 1/1/3257:3258, 1/1/3262:3270, 1/1/3494:3496 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_6HRM_007 | 1/1/3563:3570, 1/1/3952:3959, 1/1/4006:4013, 1/1/4088:4094, 1/1/4112:4117 | No text annotation | ||
| J5_6HRM_008 | 1/1/3580:3583, 1/1/3749:3752, 1/1/3764:3765, 1/1/3787:3788, 1/1/3933:3941 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_6HRM_001 | 1/1/1551:1552, 1/1/1685:1689, 1/1/1720:1730, 1/1/1737:1741, 1/1/1768:1772, 1/1/1932:1939 | No text annotation | ||
| J6_6HRM_002 | 1/1/3580:3583, 1/1/3749:3752, 1/1/3764:3765, 1/1/3787:3790, 1/1/3890:3901, 1/1/3927:3941 | No text annotation | ||
| J7_6HRM_001 | 1/1/1492:1493, 1/1/1514:1521, 1/1/2031:2037, 1/1/3524:3529, 1/1/3546:3549, 1/1/4131:4136, 1/1/4294:4295 | No text annotation | ||
| J7_6HRM_002 | 1/1/2323:2328, 1/1/2341:2344, 1/1/2446:2452, 1/1/2477:2482, 1/1/2493:2497, 1/1/2669:2670, 1/1/2691:2696 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HRM_010 | No text annotation | ||
| J3_6HRM_031 | No text annotation |
Coloring options: