HL_6HRM_049

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

6HRM|1|1|U|2121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_049 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.1289

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6HRM|1|1|C|2117
6HRM|1|1|G|2118
6HRM|1|1|A|2119
6HRM|1|1|A|2120
6HRM|1|1|U|2121
6HRM|1|1|A|2122
6HRM|1|1|G|2123

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain D

50S ribosomal protein L4