HL_6HRM_060

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

6HRM|1|1|A|2601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_060 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2681

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6HRM|1|1|G|2597
6HRM|1|1|C|2598
6HRM|1|1|G|2599
6HRM|1|1|U|2600
6HRM|1|1|A|2601
6HRM|1|1|A|2602
6HRM|1|1|U|2603
6HRM|1|1|A|2604
6HRM|1|1|G|2605
6HRM|1|1|C|2606

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36