HL_6HRM_067

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6HRM|1|1|A|2959, 6HRM|1|1|C|2960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_067 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1694

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6HRM|1|1|C|2957
6HRM|1|1|G|2958
6HRM|1|1|A|2959
6HRM|1|1|C|2960
6HRM|1|1|G|2961
6HRM|1|1|G|2962
6HRM|1|1|U|2963
6HRM|1|1|U|2964
6HRM|1|1|G|2965

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17